000153611 001__ 153611
000153611 005__ 20251017144552.0
000153611 0247_ $$2doi$$a10.1111/tpj.14538
000153611 0248_ $$2sideral$$a116782
000153611 037__ $$aART-2020-116782
000153611 041__ $$aeng
000153611 100__ $$aAlioto, T.
000153611 245__ $$aTransposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence
000153611 260__ $$c2020
000153611 5060_ $$aAccess copy available to the general public$$fUnrestricted
000153611 5203_ $$aWe sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short- and long-read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated almond genome size of 238 Mb, of which 91% is anchored to eight pseudomolecules corresponding to its haploid chromosome complement, and annotated 27 969 protein-coding genes and 6747 non-coding transcripts. By phylogenomic comparison with the genomes of 16 additional close and distant species we estimated that almond and peach (Prunus persica) diverged around 5.88 million years ago. These two genomes are highly syntenic and show a high degree of sequence conservation (20 nucleotide substitutions per kb). However, they also exhibit a high number of presence/absence variants, many attributable to the movement of transposable elements (TEs). Transposable elements have generated an important number of presence/absence variants between almond and peach, and we show that the recent history of TE movement seems markedly different between them. Transposable elements may also be at the origin of important phenotypic differences between both species, and in particular for the sweet kernel phenotype, a key agronomic and domestication character for almond. Here we show that in sweet almond cultivars, highly methylated TE insertions surround a gene involved in the biosynthesis of amygdalin, whose reduced expression has been correlated with the sweet almond phenotype. Altogether, our results suggest a key role of TEs in the recent history and diversification of almond and its close relative peach.
000153611 536__ $$9info:eu-repo/grantAgreement/ES/INIA/RTA2014-00062$$9info:eu-repo/grantAgreement/ES/MINECO-FEDER/AGL2012-40228-C02-01$$9info:eu-repo/grantAgreement/ES/MINECO-FEDER/AGL2015-68329-R$$9info:eu-repo/grantAgreement/ES/MINECO-FEDER/AGL2016-78992-R$$9info:eu-repo/grantAgreement/ES/MINECO-FEDER/RTA2015-00050-00-00$$9info:eu-repo/grantAgreement/ES/MINECO/SEV-2015-0533
000153611 540__ $$9info:eu-repo/semantics/openAccess$$aby$$uhttps://creativecommons.org/licenses/by/4.0/deed.es
000153611 590__ $$a6.417$$b2020
000153611 591__ $$aPLANT SCIENCES$$b15 / 235 = 0.064$$c2020$$dQ1$$eT1
000153611 592__ $$a3.057$$b2020
000153611 593__ $$aCell Biology$$c2020$$dQ1
000153611 593__ $$aPlant Science$$c2020$$dQ1
000153611 593__ $$aGenetics$$c2020$$dQ1
000153611 655_4 $$ainfo:eu-repo/semantics/article$$vinfo:eu-repo/semantics/publishedVersion
000153611 700__ $$aAlexiou, K. G.
000153611 700__ $$aBardil, A.
000153611 700__ $$aBarteri, F.
000153611 700__ $$aCastanera, R.
000153611 700__ $$aCruz, F.
000153611 700__ $$aDhingra, A.
000153611 700__ $$aDuval, H.
000153611 700__ $$aFernández i Martí, Á.
000153611 700__ $$aFrias, L.
000153611 700__ $$aGalán, B.
000153611 700__ $$aGarcía, J. L.
000153611 700__ $$aHowad, W.
000153611 700__ $$aGómez-Garrido, J.
000153611 700__ $$aGut, M.
000153611 700__ $$aJulca, I.
000153611 700__ $$aMorata, J.
000153611 700__ $$aPuigdomènech, P.
000153611 700__ $$aRibeca, P.
000153611 700__ $$0(orcid)0000-0002-3455-0145$$aRubio Cabetas, M. J.
000153611 700__ $$aVlasova, A.
000153611 700__ $$aWirthensohn, M.
000153611 700__ $$aGarcia-Mas, J.
000153611 700__ $$aGabaldón, T.
000153611 700__ $$aCasacuberta, J. M.
000153611 700__ $$aArús, P.
000153611 773__ $$g101, 2 (2020), 455-472$$pPlant j.$$tPLANT JOURNAL$$x0960-7412
000153611 85641 $$uhttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85074515827&doi=10.1111%2ftpj.14538&partnerID=40&md5=13528460e9a5ab2a9c206fe086b6f8c2$$zTexto completo de la revista
000153611 8564_ $$s1040160$$uhttps://zaguan.unizar.es/record/153611/files/texto_completo.pdf$$yVersión publicada
000153611 8564_ $$s2793337$$uhttps://zaguan.unizar.es/record/153611/files/texto_completo.jpg?subformat=icon$$xicon$$yVersión publicada
000153611 909CO $$ooai:zaguan.unizar.es:153611$$particulos$$pdriver
000153611 951__ $$a2025-10-17-14:12:04
000153611 980__ $$aARTICLE