000156655 001__ 156655 000156655 005__ 20251017144600.0 000156655 0247_ $$2doi$$a10.1093/bioinformatics/btaa218 000156655 0248_ $$2sideral$$a119206 000156655 037__ $$aART-2020-119206 000156655 041__ $$aeng 000156655 100__ $$aFernandez, J.J. 000156655 245__ $$aPolishEM: image enhancement in FIB-SEM 000156655 260__ $$c2020 000156655 5060_ $$aAccess copy available to the general public$$fUnrestricted 000156655 5203_ $$aWe have developed a software tool to improve the image quality in focused ion beam-scanning electron microscopy (FIB-SEM) stacks: PolishEM. Based on a Gaussian blur model, it automatically estimates and compensates for the blur affecting each individual image. It also includes correction for artifacts commonly arising in FIB-SEM (e.g. curtaining). PolishEM has been optimized for an efficient processing of huge FIB-SEM stacks on standard computers. 000156655 536__ $$9info:eu-repo/grantAgreement/ES/MICINN/SAF2017-84565-R 000156655 540__ $$9info:eu-repo/semantics/openAccess$$aby-nc$$uhttps://creativecommons.org/licenses/by-nc/4.0/deed.es 000156655 590__ $$a6.937$$b2020 000156655 591__ $$aBIOCHEMICAL RESEARCH METHODS$$b6 / 77 = 0.078$$c2020$$dQ1$$eT1 000156655 591__ $$aMATHEMATICAL & COMPUTATIONAL BIOLOGY$$b3 / 58 = 0.052$$c2020$$dQ1$$eT1 000156655 591__ $$aBIOTECHNOLOGY & APPLIED MICROBIOLOGY$$b18 / 158 = 0.114$$c2020$$dQ1$$eT1 000156655 592__ $$a3.599$$b2020 000156655 593__ $$aBiochemistry$$c2020$$dQ1 000156655 593__ $$aComputational Mathematics$$c2020$$dQ1 000156655 593__ $$aStatistics and Probability$$c2020$$dQ1 000156655 593__ $$aComputer Science Applications$$c2020$$dQ1 000156655 593__ $$aMolecular Biology$$c2020$$dQ1 000156655 593__ $$aComputational Theory and Mathematics$$c2020$$dQ1 000156655 655_4 $$ainfo:eu-repo/semantics/article$$vinfo:eu-repo/semantics/publishedVersion 000156655 700__ $$aTorres, T.E. 000156655 700__ $$aMartin-Solana, E. 000156655 700__ $$0(orcid)0000-0003-1558-9279$$aGoya, G.F.$$uUniversidad de Zaragoza 000156655 700__ $$aFernandez-Fernandez, M.R. 000156655 7102_ $$12003$$2395$$aUniversidad de Zaragoza$$bDpto. Física Materia Condensa.$$cÁrea Física Materia Condensada 000156655 773__ $$g36, 12 (2020), 3947-3948$$pBioinformatics$$tBioinformatics$$x1367-4803 000156655 8564_ $$s222281$$uhttps://zaguan.unizar.es/record/156655/files/texto_completo.pdf$$yVersión publicada 000156655 8564_ $$s2761806$$uhttps://zaguan.unizar.es/record/156655/files/texto_completo.jpg?subformat=icon$$xicon$$yVersión publicada 000156655 909CO $$ooai:zaguan.unizar.es:156655$$particulos$$pdriver 000156655 951__ $$a2025-10-17-14:13:59 000156655 980__ $$aARTICLE